Slide Presentation
Cancer Genome Anatomy Project Facilitate the interface of genomics and cancer research through the establishment of platform information and technology infrastructures ◆ Make all project resources accessible through public databases and resource centers ◆
Human Tumor Gene Index
Human Gene Discovery
Cancer Chromosome Aberration Project
Genetic Annotation Initiative
EST Sequencing
cDNA 3’ EST 5’ EST 5’ EST
UniGene Release 89
Growth of Human UniGene
Cluster Sizes for Human UniGene Build 84 25000
number of clusters
20000
15000
10000
5000
0 1
2
3,4
5,8
9,16 17-32 33-64 Cluster Size
65128
129- 257- 513256 512 1024
EST Representation in UniGene for Known Genes
Total UniGene Oncogenes/Tumor Suppressors Interleukins
Known Genes 8963 161 18
Genes with EST 7979 145 12
Percent 89 90 67
The Cancer Genome Anatomy Project (http://www.ncbi.nlm.nih.gov/ncicgap)
CGAP Resource Locator
Cancer Genome Anatomy Project Summary Table Selector - Colon Example
Cancer Genome Anatomy Project Summary Table - Colon Example
The Cancer Genome Anatomy Project Summary Table of Brain Libraries/Sequences
CGAP cDNA Library Browser
Digital Differential Display Prostate Example (1)
Digital Differential Display Prostate Example (2)
CGAP GeneExpress P53 Example
CGAP cDNA Expression Profiler
CGAP Tumor Suppressor and Oncogene Directory
CGAP Tumor Suppressor and Oncogene Directory VHL Example
CGAP Tumor Suppressor and Oncogene Directory VHL Example
CGAP Tumor Suppressor and Oncogene Directory VHL Example
CGAP Tumor Suppressor and Oncogene Directory VHL Example GGenbank
UniGene
OMIM IMAGE
Serial Analysis of Gene Expression
CGAP Serial Analysis of Gene Expression
CGAP Genetic Annotation Initiative
CGAP Genetic Annotation Initiative Home Page (http://lpg.nci.nih.gov/gai)
CGAP Genetic Annotation Initiative GST Example
CGAP Genetic Annotation Initiative GST Example
CGAP Genetic Annotation Initiative GST Example
CGAP Genetic Annotation Initiative GST Example
CGAP Genetic Annotation Initiative GST Example
CGAP Genetic Annotation Initiative Imagemaps Showing Genetic Locations of Confirmed and Predicted SNPs
CGAP Genetic Annotation Initiative Map Locations of Identified SNPs
Human Tumor Gene Index
Human Gene Discovery
Cancer Chromosome Aberration Project
Genetic Annotation Initiative
EST Sequencing
cDNA 3’ EST 5’ EST 5’ EST
UniGene Release 89
Growth of Human UniGene
Cluster Sizes for Human UniGene Build 84 25000
number of clusters
20000
15000
10000
5000
0 1
2
3,4
5,8
9,16 17-32 33-64 Cluster Size
65128
129- 257- 513256 512 1024
EST Representation in UniGene for Known Genes
Total UniGene Oncogenes/Tumor Suppressors Interleukins
Known Genes 8963 161 18
Genes with EST 7979 145 12
Percent 89 90 67
The Cancer Genome Anatomy Project (http://www.ncbi.nlm.nih.gov/ncicgap)
CGAP Resource Locator
Cancer Genome Anatomy Project Summary Table Selector - Colon Example
Cancer Genome Anatomy Project Summary Table - Colon Example
The Cancer Genome Anatomy Project Summary Table of Brain Libraries/Sequences
CGAP cDNA Library Browser
Digital Differential Display Prostate Example (1)
Digital Differential Display Prostate Example (2)
CGAP GeneExpress P53 Example
CGAP cDNA Expression Profiler
CGAP Tumor Suppressor and Oncogene Directory
CGAP Tumor Suppressor and Oncogene Directory VHL Example
CGAP Tumor Suppressor and Oncogene Directory VHL Example
CGAP Tumor Suppressor and Oncogene Directory VHL Example
CGAP Tumor Suppressor and Oncogene Directory VHL Example GGenbank
UniGene
OMIM IMAGE
Serial Analysis of Gene Expression
CGAP Serial Analysis of Gene Expression
CGAP Genetic Annotation Initiative
CGAP Genetic Annotation Initiative Home Page (http://lpg.nci.nih.gov/gai)
CGAP Genetic Annotation Initiative GST Example
CGAP Genetic Annotation Initiative GST Example
CGAP Genetic Annotation Initiative GST Example
CGAP Genetic Annotation Initiative GST Example
CGAP Genetic Annotation Initiative GST Example
CGAP Genetic Annotation Initiative Imagemaps Showing Genetic Locations of Confirmed and Predicted SNPs
CGAP Genetic Annotation Initiative Map Locations of Identified SNPs
