DPCC Data Dictionary v1.2
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DPCC Data Dictionary v1.2 Name and Description Assays viral hemagglutination assay viral hemagglutination inhibition assay
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viral neuraminidase inhibition assay
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96-well microneutralization assay
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Virus isolation
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Enzyme-Linked ImmunoSorbent Assay
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real time reverse-transcription polymerase chain reaction assay
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reverse transcribed polymerase chain reaction
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DNA Sequencing
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Status
Accepted
Accepted
Accepted
Notation
Example Entry
HA HI
Entry Type
Applicable Fields
Ontolgy Reference
Comments
Assay Assay
Influenza_Test_Type Ontology for Biomedical Investigations Influenza_Test_Type Ontology for Biomedical Investigations
Assay
Influenza_Test_Type National Cancer Institute Thesaurus
Assay
Influenza_Test_Type Ontology for Biomedical Investigations
Assay
Influenza_Test_Type Current Procedural Terminology
Assay
Influenza_Test_Type Ontology for Biomedical Investigations
Assay
Influenza_Test_Type Ontology for Biomedical Investigations
Assay
Influenza_Test_Type Ontology for Biomedical Investigations
Assay
Influenza_Test_Type Ontology for Biomedical Investigations
Rapid Antigen Test Avian Influenza Virus Antibody Test Kit Electrospray ionization mass spectrometry Fluorescent immunoassay
HA/HA HI/HA HI/antibody NI NI/NA NI/antibody MNA MNA/HA MNA/antigen VI VI/MDCK VI/ECE ELISA ELISA/HA ELISA/NP ELISA/antigen ELISA/antibody RRT-PCR RRT-PCR/MP RRT-PCR/HA RRT-PCR/H1 RT-PCR RT-PCR/MP RT-PCR/HA RT-PCR/H1 nucleotide sequencing nucleotide sequencing/HA nucleotide sequencing/NA nucleotide sequencing/multiple genes RAT RAT/antigen AIV-AB-ELISA-KIT AIV-AB-ELISA-KIT/antibody ESI-MS ESI-MS/multiple genes IFA IFA/NP
Assay Assay Assay Assay
Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type
Enzyme-linked lectin assay
ELLA
ELLA/antibody
Assay
National Cancer Institute Thesaurus N/A Eagle-I Research Resource Ontology Systematized Nomenclature of Medicine Clinical Terms Influenza_Test_Type N/A
ELISA/antigen
Analyte
Influenza_Test_Type N/A
Derived from user data. No ontology reference.
sequencing/multiple genes ESI-MS/multiple genes
Analyte
Influenza_Test_Type N/A
Derived from user data. No ontology reference.
ELISA/antibody
Analyte
Influenza_Test_Type Systematized Nomenclature of Medicine Clinical Terms
Analytes General Analytes Antigen - If selected as the Analyte, the Assay tests for antigen presence of viral antigens, including whole virus, inactivated virus, or viral proteins. Multiple genes - If selected as the Analyte, the Assay multiple genes tests for presence of influenza sequence in two or more genes or gene segments. Antibody - If selected as the Analyte, the Assay tests for antibody presence of influenza-specific antibodies in serum.
For any other questions please contact
[email protected] Changed to HA following community feedback. Change was proposed to the authors of the Ontology for Biomedical Investigations. Revised abbreviation for consistency with 'HI'.
Derived from user data. No ontology reference.
Derived from user data. No ontology reference.
DPCC Data Dictionary v1.2
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Genes of influenza virus Influenza A virus segment 1 Influenza A virus segment 2 Influenza A virus segment 3 Influenza A virus segment 4 Influenza A virus segment 5 Influenza A virus segment 6 Influenza A virus segment 7 Influenza A virus segment 8 Influenza B virus segment 1 Influenza B virus segment 2 Influenza B virus segment 3 Influenza B virus segment 4 Influenza B virus segment 5 Influenza B virus segment 6 Influenza B virus segment 7 Influenza B virus segment 8 Influenza C virus segment 1 Influenza C virus segment 2 Influenza C virus segment 3 Influenza C virus segment 4 Influenza C virus segment 5 Influenza C virus segment 6 Influenza C virus segment 7 Influenza D virus segment 1 Influenza D virus segment 2 Influenza D virus segment 3 Influenza D virus segment 4 Influenza D virus segment 5 Influenza D virus segment 6 Influenza D virus segment 7
PB2 PB1 PA HA NP NA MP NS PB1 PB2 PA HA NP NA MP NS PB2 PB1 P3 HE NP MP NS PB2 PB1 P3 HE NP P42 NS
RRT-PCR/PB2 RRT-PCR/PB1 RRT-PCR/PA RRT-PCR/HA RRT-PCR/NP RRT-PCR/NA RRT-PCR/MP RRT-PCR/NS RRT-PCR/PB1 RRT-PCR/PB2 RRT-PCR/PA RRT-PCR/HA RRT-PCR/NP RRT-PCR/NA RRT-PCR/MP RRT-PCR/NS RRT-PCR/PB2 RRT-PCR/PB1 RRT-PCR/P3 RRT-PCR/HE RRT-PCR/NP RRT-PCR/MP RRT-PCR/NS RRT-PCR/PB2 RRT-PCR/PB1 RRT-PCR/P3 RRT-PCR/HE RRT-PCR/NP RRT-PCR/P42 RRT-PCR/NS
Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte
Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type
For any other questions please contact
[email protected] NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database NCBI Influenza Virus Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database
DPCC Data Dictionary v1.2
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Protein-coding genes of influenza virus BM2 matrix protein 2 viral matrix protein surface glycoprotein hemagglutinin hemagglutinin-esterase protein matrix protein 1 matrix protein 2 M42 protein neuraminidase NB protein nucleocapsid protein nonstructural protein 1 nonstructural protein 2 NS3 protease/helicase RNA polymerase subunit P3 P42 protein RNA polymerase subunit PA PA-N155 protein PA-N182 protein endonuclease PA-X RNA polymerase subunit PB1 virulence protein PB1-F2 PB1-N40 protein RNA polymerase subunit PB2
BM2 CM1 CM2 HA HE M1 M2 M42 NA NB NP NS1 NS2 NS3 P3 P42 PA PA-N155 PA-N182 PA-X PB1 PB1-F2 PB1-N40 PB2
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Subtypes of influenza virus Influenza A virus hemagglutinin H1 subtype Influenza A virus hemagglutinin H2 subtype Influenza A virus hemagglutinin H3 subtype Influenza A virus hemagglutinin H4 subtype Influenza A virus hemagglutinin H5 subtype Influenza A virus hemagglutinin H6 subtype Influenza A virus hemagglutinin H7 subtype Influenza A virus hemagglutinin H8 subtype Influenza A virus hemagglutinin H9 subtype Influenza A virus hemagglutinin H10 subtype Influenza A virus hemagglutinin H11 subtype Influenza A virus hemagglutinin H12 subtype Influenza A virus hemagglutinin H13 subtype Influenza A virus hemagglutinin H14 subtype Influenza A virus hemagglutinin H15 subtype Influenza A virus hemagglutinin H16 subtype Influenza A virus hemagglutinin H17 subtype Influenza A virus hemagglutinin H18 subtype Influenza A virus neuraminidase N1 subtype Influenza A virus neuraminidase N2 subtype Influenza A virus neuraminidase N3 subtype Influenza A virus neuraminidase N4 subtype Influenza A virus neuraminidase N5 subtype Influenza A virus neuraminidase N6 subtype Influenza A virus neuraminidase N7 subtype Influenza A virus neuraminidase N8 subtype Influenza A virus neuraminidase N9 subtype Influenza A virus neuraminidase N10 subtype Influenza B virus hemagglutinin B/Victoria lineage Influenza B virus hemagglutinin B/Yamagata lineage Influenza B virus neuraminidase B/Victoria lineage Influenza B virus neuraminidase B/Yamagata lineage
H1 H2 H3 H4 H5 H6 H7 H8 H9 H10 H11 H12 H13 H14 H15 H16 H17 H18 N1 N2 N3 N4 N5 N6 N7 N8 N9 N10 HA-B-Vic HA-B-Yam NA-B-Vic NA-B-Yam
RRT-PCR/H1 RRT-PCR/H2 RRT-PCR/H3 RRT-PCR/H4 RRT-PCR/H5 RRT-PCR/H6 RRT-PCR/H7 RRT-PCR/H8 RRT-PCR/H9 RRT-PCR/H10 RRT-PCR/H11 RRT-PCR/H12 RRT-PCR/H13 RRT-PCR/H14 RRT-PCR/H15 RRT-PCR/H16 RRT-PCR/H17 RRT-PCR/H18 RRT-PCR/N1 RRT-PCR/N2 RRT-PCR/N3 RRT-PCR/N4 RRT-PCR/N5 RRT-PCR/N6 RRT-PCR/N7 RRT-PCR/N8 RRT-PCR/N9 RRT-PCR/N10 RRT-PCR/HA-B-Vic RRT-PCR/HA-B-Yam RRT-PCR/NA-B-Vic RRT-PCR/NA-B-Yam
Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte
Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type
Influenza Research Database Influenza Research Database Influenza Research Database Ontology of Genes and Genomes Influenza Research Database Ontology of Genes and Genomes Ontology of Genes and Genomes Influenza Research Database Ontology of Genes and Genomes Influenza Research Database Ontology of Genes and Genomes Ontology of Genes and Genomes Ontology of Genes and Genomes Influenza Research Database Influenza Research Database Influenza Research Database Ontology of Genes and Genomes Influenza Research Database Influenza Research Database Ontology of Genes and Genomes Ontology of Genes and Genomes Ontology of Genes and Genomes Influenza Research Database Ontology of Genes and Genomes
Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte Analyte
Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type Influenza_Test_Type
Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database Influenza Research Database
For any other questions please contact
[email protected] DPCC Data Dictionary v1.2
Accepted
Other Unknown
Accepted
Hosts Madin-Darby canine kidney cells
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primary monkey kidney cells
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embryonated chicken eggs
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U
RT-PCR/U
Analyte
Influenza_Test_Type N/A
Vero cells
MDCK C PMK M ECE E VERO
Madin-Darby canine kidney cells (MDCK) over expressing α-2,6-Sialyltransferase (SIAT) Mouse (whole organism)
MDCK-SIAT S Mouse
VI/MDCK C2 VI/PMK M2 VI/ECE E2 VI/VERO VERO2 VI/MDCK-SIAT S2 VI/Mouse Mouse2
Analyte Host Analyte Host Analyte Host Analyte Host Analyte Host Analyte Host
Influenza_Test_Type Passage_History Influenza_Test_Type Passage_History Influenza_Test_Type Passage_History Influenza_Test_Type Passage_History Influenza_Test_Type Passage_History Influenza_Test_Type Passage_History
For any other questions please contact
[email protected] Cell Line Ontology Cell Line Ontology N/A
Correction requested to remove the term 'immortal'. Derived from user data. No ontology reference.
Cell Line Ontology N/A
Derived from user data. No ontology reference.
N/A
Derived from user data. No ontology reference.